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İptal
Bulunan: 5 Adet 0.001 sn
- Eklemek veya çıkarmak istediğiniz kriterleriniz için 'VE' / 'VEYA' /'DEĞİL' seçeneğini kullanabilirsiniz.
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Filtreler
Filtreler
Bulunan: 5 Adet 0.001 sn
Yayıncı : Taylor & Francis ✕Kaynak : Journal of Biomolecu ... ✕
Koleksiyon [1]
Araştırmacılar [1]
BM Sürdürülebilir Kalkınma [5]
Fakültesi / Enstitütü [1]
Yayın Türü [2]
Yayımlanma Yılı [3]
Dil [1]
Kaynak [1]
Veri Tabanları [3]
İndex Türü [2]
Yayıncı [1]
Bölümü [1]
Ulusal/Uluslararası [1]
Konu Başlıkları [26]
Erişime Açık

Comparative modeling and enzymatic affinity of novel haloacid dehalogenase from Bacillus megaterium strain BHS1 isolated from alkaline Blue Lake in Turkey

Yılmaz KAYA

This study presents the initial structural model of L-haloacid dehalogenase (DehLBHS1) from Bacillus megaterium BHS1, an alkalotolerant bacterium known for its ability to degrade halogenated environmental pollutants. The model provides insights into the structural features of DehLBHS1 and expands our understanding of the enzymatic mechanisms involved in the degradation of these hazardous pollutants. Key amino acid residues (Arg40, Phe59, Asn118, Asn176, and Trp178) in DehLBHS1 were identified to play critical roles in catalysis and molecular recognition of haloalkanoic acid, essential for effi ...Daha fazlası

Makale 2023 Fen Fakültesi Journal of Biomolecular Structure and Dynamics42 ( 3 ) 54 Görüntülenme
Erişime Açık

Biodegradation of 3-chloropropionic acid (3-CP) by Bacillus cereus WH2 and its in silico enzyme-substrate docking analysis

Yılmaz KAYA

KeyWords Plus:ALPHA-HALOALKANOIC ACID; DEHALOGENASE; DEGRADATION

Mektup 2019 Fen Fakültesi Journal of Biomolecular Structure and Dynamics38 ( 11 ) 136 Görüntülenme
Erişime Açık

Haloadaptation: insights from comparative modeling studies between halotolerant and non-halotolerant dehalogenases

Yılmaz KAYA

Halophiles are extremophilic microorganisms that grow optimally at high salt concentrations by producing a myriad of equally halotolerant enzymes. Structural haloadaptation of these enzymes adept to thriving under high-salt environments, though are not fully understood. Herein, the study attempts an in silico investigation to identify and comprehend the evolutionary structural adaptation of a halotolerant dehalogenase, DehHX (GenBank accession number: KR297065) of the halotolerant Pseudomonas halophila, over its non-halotolerant counterpart, DehMX1 (GenBank accession number KY129692) produced ...Daha fazlası

Makale 2019 Fen Fakültesi Journal of Biomolecular Structure and Dynamics38 ( 12 ) 113 Görüntülenme
Erişime Açık

Substrate docking and molecular dynamic simulation for prediction of fungal enzymes from Trichoderma species-assisted extraction of nanocellulose from oil palm leaves

Yılmaz KAYA

Fungi of the Trichoderma species are valued industrial enzymes in support of the

Makale 2019 Fen Fakültesi Journal of Biomolecular Structure and Dynamics38 ( 14 ) 132 Görüntülenme
Erişime Açık

Molecular docking and molecular dynamics simulations studies on beta-glucosidase and xylanase Trichoderma asperellum to predict degradation order of cellulosic components in oil palm leaves for nanocellulose preparation

Yılmaz KAYA

Literature has shown that oil palm leaves (OPL) can be transformed into nanocellulose (NC) by fungal lignocellulosic enzymes, particularly those produced by the Trichoderma species. However, mechanism of beta-glucosidase and xylanase selectivity to degrade lignin, hemicellulose and cellulose in OPL for NC production remains relatively vague. The study aimed to comprehend this aspect by an in silico approach of molecular docking, molecular dynamics (MD) simulation and Molecular-mechanics Poisson-Boltzmann surface area (MM-PBSA) analysis, to compare interactions between the beta-glucosidase- and ...Daha fazlası

Makale 2020 Fen Fakültesi Journal of Biomolecular Structure and Dynamics39 ( 7 ) 77 Görüntülenme
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